PAÜ .:. Eğitim Öğretim Bilgi Sistemi

COURSE INFORMATION

Course Code	Course Title	L+P Hour	Semester	ECTS
BIO 513	APPLICATIONS OF BIOINFORMATICS IN BIOCHEMISTRY	3 + 0	2nd Semester	7,5

COURSE DESCRIPTION

Course Level	Master's Degree
Course Type	Elective
Course Objective	Basic knowledge about applications of bioinformatics in biochemistry such sequence alignment of proteins, molecular phylogenetics, structural bioinformatics, protein-protein interactions etc.
Course Content	Introduction to Protein Structure Prediction, Protein Secondary Structure Prediction, Protein Tertiary Structure Prediction, Comparative Modeling, Protein structure Visualization, Bioinformatics Applications for proteomics, Protein Sorting, Post-translational Modiﬁcation, Protein-Protein Interaction, Bioinformatics Application: Predicting Protein.
Prerequisites	No the prerequisite of lesson.
Corequisite	No the corequisite of lesson.
Mode of Delivery	Face to Face

COURSE LEARNING OUTCOMES

1	Will be able to know proteins’s seondary and tertiary structures
2	Will be able to do analyze Comparative Modeling
3	Will be able to know Bioinformatics Applications for proteomics
4	Will be able to know Protein Sorting
5	Will be able to solve protein-protein interaction
6	Will be able to do Structure-Based Rational Drug Design
7	Will be able to do Molecular phylogenetics

COURSE'S CONTRIBUTION TO PROGRAM

	PO 01	PO 02	PO 03	PO 04	PO 05	PO 06	PO 07	PO 08	PO 09	PO 10	PO 11
LO 001	4	3	3	3	5			3	5	1
LO 002	5	2	2	4	5			4	5	1
LO 003	5	4	3	3	5			3	5	1
LO 004	4	4	4	5	5			3	5	1
LO 005	5	5	2	3	5			4	4	1
LO 006	5	4	3	5	5			3	4	1
LO 007	5	3	4	4	5			2	4	1
Sub Total	33	25	21	27	35			22	32	7
Contribution	5	4	3	4	5	0	0	3	5	1	0

ECTS ALLOCATED BASED ON STUDENT WORKLOAD BY THE COURSE DESCRIPTION

Activities	Quantity	Duration (Hour)	Total Work Load (Hour)
Course Duration (14 weeks/theoric+practical)	14	3	42
Hours for off-the-classroom study (Pre-study, practice)	14	7	98
Assignments	1	5	5
Mid-terms	1	15	15
Final examination	1	35	35
Total Work Load ECTS Credit of the Course			195 7,5

COURSE DETAILS

Select Year

Course Details

Course Code	Course Title	L+P Hour	Course Code	Language Of Instruction	Course Semester
BIO 513	APPLICATIONS OF BIOINFORMATICS IN BIOCHEMISTRY	3 + 0	1	Turkish	2014-2015 Spring

Course Coordinator	E-Mail	Phone Number	Course Location	Attendance
Prof. Dr. ŞEVKİ ARSLAN	sevkia@pau.edu.tr		FEN B0308	%

Goals		Basic knowledge about applications of bioinformatics in biochemistry such sequence alignment of proteins, molecular phylogenetics, structural bioinformatics, protein-protein interactions etc.
Content		Introduction to Protein Structure Prediction, Protein Secondary Structure Prediction, Protein Tertiary Structure Prediction, Comparative Modeling, Protein structure Visualization, Bioinformatics Applications for proteomics, Protein Sorting, Post-translational Modiﬁcation, Protein-Protein Interaction, Bioinformatics Application: Predicting Protein.

Topics

Weeks	Topics
1	Protein structure
2	Secondary structures of proteins
3	Tertiary structures of proteins
4	comparative modeling
5	visualization of protein structure
6	Bioinformatic applications in proteomics
7	classification of proteins
8	post translasyonel modifications
9	protein protein interaction
10	Bioinformatic applications
11	Midterm
12	Structure-based drug design
13	Molecular Phylogenetic
14	Presentations

Materials

Materials are not specified.

Resources

Course Assessment

Assesment Methods	Percentage (%)	Assesment Methods Title
Final Exam	50	Final Exam
Midterm Exam	50	Midterm Exam

L+P: Lecture and Practice
PQ: Program Learning Outcomes
LO: Course Learning Outcomes

Prospective Student